mutcleaner.utils.dataset_builders#

Functions

convert_format_1(df, name_column, ...)

Convert Format 1 (with WT rows) to mutation dataset format.

convert_format_2(df, name_column, ...)

Convert Format 2 (with sequence column) to mutation dataset format.
mutcleaner.utils.dataset_builders.convert_format_1(df, name_column, mutation_column, mutated_sequence_column, score_column, include_wild_type, mutation_set_prefix, is_zero_based, additional_metadata, sequence_class, mutation_type, alphabet)[source]#

Convert Format 1 (with WT rows) to mutation dataset format.

Return type:

Tuple[DataFrame, Dict[str, BaseSequence]]

mutcleaner.utils.dataset_builders.convert_format_2(df, name_column, mutation_column, sequence_column, score_column, mutation_set_prefix, is_zero_based, additional_metadata, sequence_class, mutation_type, alphabet)[source]#

Convert Format 2 (with sequence column) to mutation dataset format.

Return type:

Tuple[DataFrame, Dict[str, BaseSequence]]