mutcleaner.utils.data_source#

Functions

list_datasets_with_built_in_cleaners()

List built-in datasets with predefined processing pipelines.

show_download_instructions(dataset_key)

Show download instructions for a specific dataset.
mutcleaner.utils.data_source.list_datasets_with_built_in_cleaners()[source]#

List built-in datasets with predefined processing pipelines.

These are public datasets for which this package includes pre-defined data cleaning pipelines. The datasets themselves are not distributed with the package and must be downloaded manually.

You can also define custom cleaner functions for your own datasets using the same @pipeline_step framework.

Predefined datasets:

  • cDNA Proteolysis Dataset

  • ProteinGym DMS Substitutions Dataset

  • Human Domainome Dataset

  • ΔΔG Dataset

  • ΔTm Dataset

  • Antitoxin ParD3 Epistasis Dataset

  • TrpB Epistasis Dataset

  • Human Myoglobin Epistasis Dataset

  • CTXM Epistasis Dataset

  • RBD Antibody Dataset

  • RBD ACE2 Dataset

  • Chitosanase dTm Dataset

  • MGnify ddG Dataset

Return type:

None

mutcleaner.utils.data_source.show_download_instructions(dataset_key)[source]#

Show download instructions for a specific dataset.

Return type:

None