mutcleaner.core.codon#

Classes

CodonTable(name, codon_map[, start_codons, ...])

codon table used to translate codons to amino acids

class mutcleaner.core.codon.CodonTable(name, codon_map, start_codons=None, stop_codons=None)[source]#

Bases: object

codon table used to translate codons to amino acids

Methods

`get_standard_table`([seq_type])	get standard codon table (NCBI standard)
`get_table_by_name`(name[, seq_type])	get codon table by name
`is_start_codon`(codon)	check if codon is a start codon
`is_stop_codon`(codon)	check if codon is a stop codon
`translate_codon`(codon)	translate single codon to corresponding amino acid

classmethod get_standard_table(seq_type='DNA')[source]#

get standard codon table (NCBI standard)

classmethod get_table_by_name(name, seq_type='DNA')[source]#

get codon table by name

is_start_codon(codon)[source]#

check if codon is a start codon

is_stop_codon(codon)[source]#

check if codon is a stop codon

translate_codon(codon)[source]#

translate single codon to corresponding amino acid